de.unirostock.sems.bives.ds.hn

Class HierarchyNetwork

java.lang.Object

de.unirostock.sems.bives.ds.hn.HierarchyNetwork

public class HierarchyNetwork
extends Object

The Class HierarchyNetwork representing a graphical hierarchy network, intended to visualize CellML hierarchical dependencies.

A HierarchyNetwork contains components which may contain variables. Moreover, there may be directed connections from parent components to child components representing the hierarchy among components. In addition, variables can be connected visualizing the flow of information between them.
see also HierarchyNetwork

Author:

Martin Scharm

Constructor Summary

Constructors

Constructor and Description
HierarchyNetwork() Instantiates a new hierarchy network.

Method Summary

Modifier and Type	Method and Description
HierarchyNetworkComponent	getComponent(de.unirostock.sems.xmlutils.ds.TreeNode node) Gets a component.
Collection<HierarchyNetworkComponent>	getComponents() Gets the components.
int	getNextComponentID() Gets the next component id.
int	getNextVariableID() Gets the next variable id.
HierarchyNetworkVariable	getVariable(de.unirostock.sems.xmlutils.ds.TreeNode node) Gets a variable.
Collection<HierarchyNetworkVariable>	getVariables() Gets the variables.
void	setComponent(de.unirostock.sems.xmlutils.ds.TreeNode node, HierarchyNetworkComponent comp) Adds a new component to the hierarchy.
void	setSingleDocument() Sets the single document flag for non-comparison graphs.
void	setVariable(de.unirostock.sems.xmlutils.ds.TreeNode node, HierarchyNetworkVariable var) Adds a new variable.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HierarchyNetwork

public HierarchyNetwork()

Instantiates a new hierarchy network.

Method Detail

getComponents

public Collection<HierarchyNetworkComponent> getComponents()

Gets the components.

Returns:

the components

getVariables

public Collection<HierarchyNetworkVariable> getVariables()

Gets the variables.

Returns:

the variables

getNextComponentID

public int getNextComponentID()

Gets the next component id.

Returns:

the next component id

getNextVariableID

public int getNextVariableID()

Gets the next variable id.

Returns:

the next variable id

setComponent

public void setComponent(de.unirostock.sems.xmlutils.ds.TreeNode node,
                         HierarchyNetworkComponent comp)

Adds a new component to the hierarchy.

Parameters:

node - the node in the document tree

comp - the network component

setVariable

public void setVariable(de.unirostock.sems.xmlutils.ds.TreeNode node,
                        HierarchyNetworkVariable var)

Adds a new variable.

Parameters:

node - the node in the document tree

var - the variable

getComponent

public HierarchyNetworkComponent getComponent(de.unirostock.sems.xmlutils.ds.TreeNode node)

Gets a component.

Parameters:

node - the node from the document tree

Returns:

the corresponding component

getVariable

public HierarchyNetworkVariable getVariable(de.unirostock.sems.xmlutils.ds.TreeNode node)

Gets a variable.

Parameters:

node - the node from the document tree

Returns:

the corresponding variable

setSingleDocument

public void setSingleDocument()

Sets the single document flag for non-comparison graphs.